Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | V | Z A abaco module abaco.ABaCo module abaco.dataloader module abaco.utils module abaco_recon() (in module abaco.ABaCo) abaco_recon_ensemble() (in module abaco.ABaCo) abaco_run() (in module abaco.ABaCo) abaco_run_ensemble() (in module abaco.ABaCo) ABaCoDataLoader() (in module abaco.dataloader) adversarial_loss() (in module abaco.ABaCo) arg_constraints (abaco.ABaCo.DirichletMultinomial attribute) (abaco.ABaCo.MixtureOfGaussians attribute) (abaco.ABaCo.ZIDM attribute) (abaco.ABaCo.ZINB attribute) assert_nonempty_keys() (in module abaco.utils) assert_nonempty_vals() (in module abaco.utils) assert_path() (in module abaco.utils) B batch_correct() (abaco.ABaCo.metaABaCo method) batch_mask() (abaco.ABaCo.metaABaCo method) BatchDiscriminator (class in abaco.ABaCo) C class_to_int() (in module abaco.dataloader) cluster_loss() (abaco.ABaCo.MoCPPrior method) (abaco.ABaCo.VMMPrior method) ConditionalEnsembleVAE (class in abaco.ABaCo) ConditionalVAE (class in abaco.ABaCo) contour_plot() (in module abaco.ABaCo) correct() (abaco.ABaCo.metaABaCo method) create_folder() (in module abaco.utils) D DataPreprocess() (in module abaco.dataloader) DataReverseTransform() (in module abaco.dataloader) DataTransform() (in module abaco.dataloader) decode() (abaco.ABaCo.VAE method) det_encode() (abaco.ABaCo.MoGEncoder method) (abaco.ABaCo.NormalEncoder method) df_joiner() (in module abaco.utils) DirichletMultinomial (class in abaco.ABaCo) DMDecoder (class in abaco.ABaCo) E elbo() (abaco.ABaCo.ConditionalEnsembleVAE method) (abaco.ABaCo.ConditionalVAE method) encode() (abaco.ABaCo.MoCPEncoder method) (abaco.ABaCo.MoGEncoder method) (abaco.ABaCo.NormalEncoder method) (abaco.ABaCo.VAE method) entropy() (abaco.ABaCo.MixtureOfGaussians method) F fit() (abaco.ABaCo.metaABaCo method) forward() (abaco.ABaCo.BatchDiscriminator method) (abaco.ABaCo.ConditionalEnsembleVAE method) (abaco.ABaCo.ConditionalVAE method) (abaco.ABaCo.DMDecoder method) (abaco.ABaCo.MoCPEncoder method) (abaco.ABaCo.MoCPPrior method) (abaco.ABaCo.MoGEncoder method) (abaco.ABaCo.MoGPrior method) (abaco.ABaCo.NBDecoder method) (abaco.ABaCo.NormalEncoder method) (abaco.ABaCo.NormalPrior method) (abaco.ABaCo.SupervisedContrastiveLoss method) (abaco.ABaCo.VampPriorMixtureConditionalEnsembleVAE method) (abaco.ABaCo.VampPriorMixtureConditionalVAE method) (abaco.ABaCo.VMMPrior method) (abaco.ABaCo.ZIDMDecoder method) (abaco.ABaCo.ZINBDecoder method) G generate_log_filename() (in module abaco.utils) get_args() (in module abaco.utils) get_basename() (in module abaco.utils) get_logger() (in module abaco.utils) get_posterior() (abaco.ABaCo.ConditionalEnsembleVAE method) (abaco.ABaCo.ConditionalVAE method) (abaco.ABaCo.VAE method) (abaco.ABaCo.VampPriorMixtureConditionalEnsembleVAE method) (abaco.ABaCo.VampPriorMixtureConditionalVAE method) get_prior() (abaco.ABaCo.VampPriorMixtureConditionalEnsembleVAE method) (abaco.ABaCo.VampPriorMixtureConditionalVAE method) get_time() (in module abaco.utils) H has_rsample (abaco.ABaCo.DirichletMultinomial attribute) (abaco.ABaCo.MixtureOfGaussians attribute) (abaco.ABaCo.ZIDM attribute) (abaco.ABaCo.ZINB attribute) I init_log() (in module abaco.utils) K kl_div_loss() (abaco.ABaCo.ConditionalEnsembleVAE method) (abaco.ABaCo.ConditionalVAE method) kl_divergence() (abaco.ABaCo.VAE method) kl_mog_mog() (in module abaco.ABaCo) kl_zinb_zinb() (in module abaco.ABaCo) L log_normal_diag() (in module abaco.ABaCo) log_prob() (abaco.ABaCo.ConditionalEnsembleVAE method) (abaco.ABaCo.ConditionalVAE method) (abaco.ABaCo.DirichletMultinomial method) (abaco.ABaCo.MixtureOfGaussians method) (abaco.ABaCo.VampPriorMixtureConditionalEnsembleVAE method) (abaco.ABaCo.VampPriorMixtureConditionalVAE method) (abaco.ABaCo.ZIDM method) (abaco.ABaCo.ZINB method) loss() (abaco.ABaCo.BatchDiscriminator method) M mean (abaco.ABaCo.MixtureOfGaussians property) metaABaCo (class in abaco.ABaCo) MixtureOfGaussians (class in abaco.ABaCo) MoCPEncoder (class in abaco.ABaCo) MoCPPrior (class in abaco.ABaCo) module abaco abaco.ABaCo abaco.dataloader abaco.utils MoGEncoder (class in abaco.ABaCo) MoGPrior (class in abaco.ABaCo) monte_carlo_encode() (abaco.ABaCo.MoGEncoder method) (abaco.ABaCo.NormalEncoder method) N NBDecoder (class in abaco.ABaCo) new_pre_train_abaco() (in module abaco.ABaCo) NormalEncoder (class in abaco.ABaCo) normalize_url() (in module abaco.utils) NormalPrior (class in abaco.ABaCo) O one_hot_encoding() (in module abaco.dataloader) P pca_posterior() (abaco.ABaCo.ConditionalEnsembleVAE method) (abaco.ABaCo.ConditionalVAE method) (abaco.ABaCo.VAE method) (abaco.ABaCo.VampPriorMixtureConditionalEnsembleVAE method) (abaco.ABaCo.VampPriorMixtureConditionalVAE method) pca_prior() (abaco.ABaCo.ConditionalEnsembleVAE method) (abaco.ABaCo.ConditionalVAE method) (abaco.ABaCo.VampPriorMixtureConditionalEnsembleVAE method) (abaco.ABaCo.VampPriorMixtureConditionalVAE method) plot_pca_posterior() (abaco.ABaCo.metaABaCo method) pre_train_abaco() (in module abaco.ABaCo) pre_train_abaco_ensemble() (in module abaco.ABaCo) R rsample() (abaco.ABaCo.MixtureOfGaussians method) S sample() (abaco.ABaCo.ConditionalEnsembleVAE method) (abaco.ABaCo.ConditionalVAE method) (abaco.ABaCo.DirichletMultinomial method) (abaco.ABaCo.MixtureOfGaussians method) (abaco.ABaCo.VampPriorMixtureConditionalEnsembleVAE method) (abaco.ABaCo.VampPriorMixtureConditionalVAE method) (abaco.ABaCo.ZIDM method) (abaco.ABaCo.ZINB method) sample_from_dataloader() (abaco.ABaCo.VampPriorMixtureConditionalEnsembleVAE method) (abaco.ABaCo.VampPriorMixtureConditionalVAE method) (abaco.ABaCo.VMMPrior method) SupervisedContrastiveLoss (class in abaco.ABaCo) T train_abaco() (in module abaco.ABaCo) train_abaco_ensemble() (in module abaco.ABaCo) train_vae() (abaco.ABaCo.metaABaCo method) V VAE (class in abaco.ABaCo) VampPriorMixtureConditionalEnsembleVAE (class in abaco.ABaCo) VampPriorMixtureConditionalVAE (class in abaco.ABaCo) variance() (abaco.ABaCo.MixtureOfGaussians method) VMMPrior (class in abaco.ABaCo) Z ZIDM (class in abaco.ABaCo) ZIDMDecoder (class in abaco.ABaCo) ZINB (class in abaco.ABaCo) ZINBDecoder (class in abaco.ABaCo)
